Adam Zemla Home Page

On the top of Mt. Whitney (07/03/1999)
14,491' (4417 meters)

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SELECTED PROJECTS

Developed numerical measures and algorithms

Evaluate secondary structure prediction accuracy: SOV measure

Translate sequence - structure alignment (AL) into tertiary structure (TS): AL2TS

Automated protein structure modeling system: AS2TS AS2TS_MB

Structure Alignment-based Clustering of Proteins : STRALCP

Structure Alignment-based Sequence Variability: STRALSV

Sequence Alignment-based Sequence Variability : SEQALSV

Protein structure predictions evaluation system: ACE

Sequence Identity and Structure Comparison facility: SISC

Protein Structure Comparison Facility: LGA (numerical measures: GDT and LCS) LGA_list

Elbow Angle Calculation: RBOW

Developments for CASP projects (CASP1 - CASP5)

In collaboration with John Moult, Tim Hubbard, Ceslovas Venclovas and Krzysztof Fidelis he developed a complete computational infrastructure and evaluation system (ACE - Automated CASP Evaluator) to assess protein structure modeling techniques for the worldwide Critical Assessment of Protein Structure Prediction (CASP) competitions.

Target submission facilities
Prediction submission facilities
Numerical evaluation of submitted predictions
Graphical presentation and Interactive browsers for evaluation results (see examples of LGA and GDT plots below)

His novel numerical measures and algorithms: LCS, GDT (GDT_TS, GDC_sc, GDC_all) for evaluation structural models, and LGA - structure comparison and alignment program are routinely used by CASP's organizers and assessors to evaluate accuracy of predicted structural models.

RESUME